PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00024326-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family ZF-HD
Protein Properties Length: 163aa    MW: 18132 Da    PI: 7.2224
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00024326-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer63.93.2e-201381758
            ZF-HD_dimer 17 lGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                           +Gg+a+DGCgEfmp+    ++ +al+C+ACgCHRnFHR+e +
  SMil_00024326-RA_Salv  1 MGGNATDGCGEFMPT----ADLDALTCSACGCHRNFHRKEAD 38
                           7*************9....6899****************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-12140IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.261136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.8E-19136IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.7E-15137IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE patternPS0002804262IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGGNATDGCG EFMPTADLDA LTCSACGCHR NFHRKEADGD PCDGCYPRIG RKLFLGHHHH  60
QHKGYRPHQM IMHSYNSRRP LRVRRAGRRQ SAAAGEEEVQ NQVQSGAEGE DAQLCRESWV  120
ENTEAGRRSG AAVLPRSWSQ EKSFEGMDAQ QQAYSCKEDP SSI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotO647221e-18ZHD3_ARATH; Zinc-finger homeodomain protein 3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51542338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.22e-19homeobox protein 31